FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index6_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22776199 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5032390 | 2.5911822 | 5.367237 | 1 |
| CCTGG | 5038125 | 2.5813036 | 6.172405 | 1 |
| CTTCT | 4956825 | 2.5625954 | 5.428599 | 1 |
| CTGGA | 4740425 | 2.4762065 | 8.357575 | 1 |
| TCCAG | 4618550 | 2.3888144 | 5.610643 | 2 |
| CTGCT | 4611255 | 2.373244 | 5.019885 | 1 |
| CTCCT | 4581630 | 2.3348043 | 7.0128245 | 1 |
| CTGGG | 4372935 | 2.2627463 | 8.051699 | 1 |
| CAGGA | 4295205 | 2.254795 | 5.375231 | 1 |
| CTTCA | 4250055 | 2.2081294 | 5.3814754 | 1 |
| CTCCA | 4295995 | 2.2001274 | 7.4107304 | 1 |
| CCCAG | 4258200 | 2.1709857 | 6.9875 | 1 |
| CAGAA | 3986705 | 2.1127298 | 5.0131783 | 1 |
| CTCTG | 3987135 | 2.0520322 | 6.310231 | 1 |
| CTGAA | 3539150 | 1.8662733 | 5.3596916 | 1 |
| CTCAG | 3388890 | 1.7528076 | 5.6450753 | 1 |